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2005
BIBLIOGRAPHY
Napolitani G, Rinaldi A, Bertoni F, Sallusto F, Lanzavecchia A. Selected Toll-like receptor agonist combinations synergistically trigger a T helper type 1-polarizing program in dendritic cells. Nat Immunol. 2005;6:769–776.
Chen W, Mulchandani A, Deshusses MA. Environmental biotechnology: challenges and opportunities for chemical engineers. AIChE Journal. 2005;51(3):690–695.
African, Caribbean and Pacific (ACP) ACP policy brief. 1. Wageningen, The Netherlands: CTA; 2005. ACP region must harness biotechnology for a better future.
Asamudo NU, Daba AS, Ezeronye OU. Bioremediation of textile effluent using Phanerochaete chrysosporium. African Journal of Biotechnology. 2005;4(13):1548–1553.
Tschmelak J, Proll G, Riedt J, et al. Automated Water Analyser Computer Supported System (AWACSS) Part I: project objectives, basic technology, immunoassay development, software design and networking. Biosensors and Bioelectronics. 2005;20(8):1499–1508.
Bagni G, Hernandez S, Mascini M, Sturchio E, Boccia P, Marconi S. DNA biosensor for rapid detection of genotoxic compounds in soil samples. Sensors. 2005;5(6–10):394–410.
Roncero MB, Torres AL, Colom JF, Vidal T. The effect of xylanase on lignocellulosic components during the bleaching of wood pulps. Bioresource Technology. 2005;96(1):21–30.
Inadera H, Shimomura A. Environmental chemical tributyltin augments adipocyte differentiation. Toxicol Lett. 2005;159(3):226–234.
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proc Natl Acad Sci USA. 2005;102(31):11070–11075.
Penders J, Vink C, Driessen C, London N, Thijs C, Stobberingh EE. Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. FEMS Microbiol Lett. 2005;243(1):141–147.
Van de Wiele T, Vanhaecke L, Boeckaert C, Peru K, Headley J, Verstraete W, et al. Human colon microbiota transform polycyclic aromatic hydrocarbons to estrogenic metabolites. Environ Health Perspect. 2005;113:6–10.
Lombardot T, Bauer M, Teeling H, Amann R, Glφckner FO. The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons. FEMS Microbiol Lett. 2005;242:137–145. doi: 10.1016/j.femsle.2004.10.049.
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Galperin MY. A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts. BMC Microbiol. 2005;5:5–35. doi: 10.1186/1471-2180-5-5.
Rooney-Varga JN, Giewat MW, Savin MC, Sood S, LeGresley M, Martin JL. Links between phytoplankton and bacterial community dynamics in a coastal marine environment. Microb Ecol. 2005;49:163–175. doi: 10.1007/s00248-003-1057-0.
DeLong EF. Microbial community genomics in the ocean. Nat Rev Micro. 2005;3:459–469. doi: 10.1038/nrmicro1158.
Minezaki Y, Homma K, Nishikawa K. Genome-Wide Survey of Transcription Factors in Prokaryotes Reveals Many Bacteria-Specific Families Not Found in Archaea. DNA Res. 2005;12:269–280.
Legendre P, Borcard D, Peres-Neto PR. Analyzing beta diversity: Partitioning the spatial variation of community composition data. Ecological Monographs. 2005;75:435–450.
Cottenie K. Integrating environmental and spatial processes in ecological community dynamics. Ecology Letters. 2005;8:1175–1182.
Grimm V, Revilla E, Berger U, Jeltsch F, Mooij WM, et al. Pattern-oriented modeling of agent-based complex systems: Lessons from ecology. Science. 2005;310:987–991.
Backhed F., Ley R. E., Sonnenburg J. L., Peterson D. A., Gordon J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915–1920. doi: 10.1126/science.1104816.
Cerdeno-Tarraga A. M., Patrick S., Crossman L. C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M. A., Barron A., Clark L., Corton C., Doggett J., Holden M. T., Larke N., Line A., Lord A., Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B., Parkhill J. (2005). Extensive DNA inversions in the B. fragilis genome control variable gene expression. Science 307, 1463–1465. doi: 10.1126/science.1107008.
Davies G. J., Gloster T. M., Henrissat B. (2005). Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr. Opin. Struct. Biol. 15, 637–645.
Eckburg P. B., Bik E. M., Bernstein C. N., Purdom E., Dethlefsen L., Sargent M., Gill S. R., Nelson K. E., Relman D. A. (2005). Diversity of the human intestinal microbial flora. Science 308, 1635–1638. doi: 10.1126/science.1110591.
Jenkinson H. F., Lamont R. J. (2005). Oral microbial communities in sickness and in health. Trends Microbiol. 13, 589–595. doi: 10.1016/j.tim.2005.09.006.
Kim K. K., Kim M. K., Lim J. H., Park H. Y., Lee S. T. (2005). Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int. J. Syst. Evol. Microbiol. 55, 1287–1293.
Mongodin E. F., Nelson K. E., Daugherty S., Deboy R. T., Wister J., Khouri H., Weidman J., Walsh D. A., Papke R. T., Sanchez Perez G., Sharma A. K., Nesbo C. L., Macleod D., Bapteste E., Doolittle W. F., Charlebois R. L., Legault B., Rodriguez-Valera F. (2005). The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc. Natl. Acad. Sci. U.S.A. 102, 18147–18152.
Raman R., Sasisekharan V., Sasisekharan R. (2005). Structural insights into biological roles of -protein-glycosaminoglycan interactions. Chem. Biol. 12, 267–277.
Rook G. A., Brunet L. R. (2005). Microbes, immunoregulation, and the gut. Gut 54, 317–320. doi: 10.1136/gut.2004.053785.
Thomas C. M., Nielsen K. M. (2005). Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3, 711–721.
Pusch D, Oh DY, Wolf S, Dumke R, Schrφter-Bobsin U, Hφhne M, Rφske I, Schreier E. Detection of enteric viruses and bacterial indicators in German environmental waters. Arch. Virol. 2005;150(5):929–947.
Anderson KL, Whitlock JE, Harwood VJ. Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments. Appl. Environ. Microbiol. 2005;71(6):3041–3048.
Boehm AB, Weisberg SB. Tidal forcing of enterococci at marine recreational beaches at fortnightly and semidiurnal frequencies. Environ. Sci. Technol. 2005;39(15):5575–5583.
Ferguson DM, Moore DF, Getrich MA, Zhowandai MH. Enumeration and speciation of enterococci found in marine and intertidal sediments and coastal water in southern California. J. Appl. Microbiol. 2005;99(3):598–608.
Elmanama AA, Fahd MI, Afifi S, Abdallah S, Bahr S. Microbiological beach sand quality in Gaza Strip in comparison to seawater quality. Environ. Res. 2005;99(1):1–10.
Bai S, Lung WS. Modeling sediment impact on the transport of fecal bacteria. Water Res. 2005;39(20):5232–5240.
Dwight RH, Fernandez LM, Baker DB, Semenza JC, Olson BH. Estimating the economic burden from illnesses associated with recreational coastal water pollution—a case study in Orange County, California. J. Environ. Manage. 2005;76(2):95–103.
Edwards RA, Rohwer F. Viral Metaegnomics. Nat Rev Microbiol. 2005;3:504–510.
Hamaki T, Suzuki M, Fudou R, Jojima Y, Kajiura T, Tabuchi A, et al. Isolation of novel bacteria and actinomycetes using soil-extract agar medium. J Biosci Bioengin. 2005;99:485–492.
Kysela DT, Palacios C, Sogin ML. Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition. Environ Microbiol. 2005;7:356–364.
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005;437:376–380.
Nesbψ CL, Boucher Y, Dlutek M, Doolittle WF. Lateral gene transfer and phylogenetic assignment of environmental fosmid clones. Environ Microbiol. 2005;7:2011–2026.
Shendure J, Porreca GJ, Nikos BR, Xiaoxia L, McCutcheon JP, Rosenbaum AM, et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science. 2005;309:1728–1732.
Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 2005;3:e144.
Barik, S. K. 2005. Participatory forest management in north-east India: implications for policy and human resources development. International Centre for Integrated Mountain Development, Kathmandu, in press.
Bhattacharjee, A. and Dkhar, M. S. 2005. Seed mycoflora and storage effect in the germination of French bean (Phaseolus vulgaris Linn.) Asian Journal of Microbiology, Biotechnology and Environmental Sciences (1): in press.
Chrungoo, N. K. and Bharali, S. 2005. Isolation and characterization of a genomic clone encoding a lysine and methionine rich seed storage protein of common buckwheat. Journal of Plant Physiology: in press.
Chrungoo, N. K., Bharali, S. and Jamir, C. 2005. Seed storage proteins: structure, properties and approaches for improvement by genetic engineering. Advances in Plant Physiology 8: in press.
Devi, A., Khan, M. L. and Tripathi, R. S. 2005. Biodiversity conservation in sacred groves of Manipur, north-east India: population structure and regeneration status of woody species. Biodiversity and Conservation: in press.
Devi, A., Khan, M. L. and Tripathi, R. S. 2005. Sacred groves of Manipur, northeast India: biodiversity value, status and strategies for their conservation. Biodiversity and Conservation: in press.
Devi, A., Khan, M. L. and Tripathi, R. S. 2005. An ethnobotanical study of medicinal plants in the sacred groves of Manipur, north-east India. Indian Journal of Traditional Knowledge 4: 21-32.
Jeeva S., Mishra, B. P., Venugopal, N. and Laloo, R. C. 2005. Sacred groves: traditional ecological heritage in Meghalaya. Journal of Scott Research Forum: in press.

Khan, M. L., Bhuyan, P. and Tripathi, R. S. 2005. Survival and growth of seedlings of Rudraksh (Elaeocarpus ganitrus) in nursery and forest stands. Tropical Ecology: in press.
Khan, M. L., Bhuyan, P. and Tripathi, R. S. 2005. Fruit set, dispersal and nut bank dynamics in a threatened tree species Rudraksh (Elaeocarpus ganitrus Roxb.) in eastern Himalayas in relation to cultural disturbances. Current Science 88:133-142.
Khumbongmayum, A. D., Khan, M. L. and Tripathi, R. S. 2005. Survival and growth of seedlings of a few tree species in the four sacred groves of Manipur, north-east India. Current Science: in press.
Mishra, B. P. and Laloo, R. C. 2005. Effect of fragmentation on plant diversity and community characters of the sacred grove of Meghalaya. Pages xx-xx in 50th Annual Technical Session of Assam Science Society and National Conference on Current Trends of Research in Science and Technology, P. C. Deka and D. K. Jha (eds). Assam Science Society, Guwahati.
Ralte, V., Pandey, H. N., Barik, S. K., Tripathi, R. S. and Prabhu, S. D. 2005. Changes in microbial biomass and activity in relation to shifting cultivation and horticultural practices in subtropical evergreen forest ecosystem of north-east India. Acta Oecologia: in press.
Tandon, P. and Kumaria, S. 2005. Prospects of plant conservation biotechnology in India with special reference to northeastern region. Pages 79-92 in Biodiversity: status and prospects, P. Tandon, M. Sharma and R. Swarup (eds). Narosa Publishing House, New Delhi, India.
Tandon, P., Sharma, M. and Swarup, R. (eds) 2005. Biodiversity - status and prospects. Narosa Publising House, New Delhi. 233 pp.
Uma Shankar 2005. Seed size as a predictor of germination success and early seedling growth in 'hollong' (Dipterocarpus macrocarpus Vesque). New Forests 29: in press.
Upadhaya, K., Pandey, H. N., Law, P. and Tripathi, R. S. 2005. Dynamics of fine roots and coarse roots and nitrogen mineralization in a humid subtropical forest ecosystem of northeast India. Biology and Fertility of Soils: in press.

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